IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2775-2780. doi: 10.1109/TCBB.2021.3065361. Epub 2021 Dec 8.
A novel coronavirus (COVID-19) recently emerged as an acute respiratory syndrome, and has caused a pneumonia outbreak world-widely. As the COVID-19 continues to spread rapidly across the world, computed tomography (CT) has become essentially important for fast diagnoses. Thus, it is urgent to develop an accurate computer-aided method to assist clinicians to identify COVID-19-infected patients by CT images. Here, we have collected chest CT scans of 88 patients diagnosed with COVID-19 from hospitals of two provinces in China, 100 patients infected with bacteria pneumonia, and 86 healthy persons for comparison and modeling. Based on the data, a deep learning-based CT diagnosis system was developed to identify patients with COVID-19. The experimental results showed that our model could accurately discriminate the COVID-19 patients from the bacteria pneumonia patients with an AUC of 0.95, recall (sensitivity) of 0.96, and precision of 0.79. When integrating three types of CT images, our model achieved a recall of 0.93 with precision of 0.86 for discriminating COVID-19 patients from others. Moreover, our model could extract main lesion features, especially the ground-glass opacity (GGO), which are visually helpful for assisted diagnoses by doctors. An online server is available for online diagnoses with CT images by our server (http://biomed.nscc-gz.cn/model.php). Source codes and datasets are available at our GitHub (https://github.com/SY575/COVID19-CT).
一种新型冠状病毒(COVID-19)最近出现急性呼吸道综合征,并在全球范围内引发肺炎疫情。由于 COVID-19 在世界范围内迅速传播,计算机断层扫描(CT)对于快速诊断变得至关重要。因此,迫切需要开发一种准确的计算机辅助方法,通过 CT 图像帮助临床医生识别 COVID-19 感染患者。在这里,我们从中国两个省份的医院收集了 88 名经诊断患有 COVID-19 的患者、100 名感染细菌性肺炎的患者和 86 名健康人的胸部 CT 扫描图像进行对比和建模。基于这些数据,我们开发了一种基于深度学习的 CT 诊断系统来识别 COVID-19 患者。实验结果表明,我们的模型可以准确地区分 COVID-19 患者和细菌性肺炎患者,AUC 为 0.95,召回率(敏感性)为 0.96,准确率为 0.79。当整合三种 CT 图像时,我们的模型可以达到 0.93 的召回率和 0.86 的准确率,用于区分 COVID-19 患者和其他患者。此外,我们的模型可以提取主要病变特征,特别是磨玻璃影(GGO),这对医生的辅助诊断具有视觉帮助。我们的服务器提供在线 CT 图像诊断服务(http://biomed.nscc-gz.cn/model.php)。源代码和数据集可在我们的 GitHub(https://github.com/SY575/COVID19-CT)上获取。