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意大利北部树莓上的新种(线虫纲:短体线虫科)及其形态计量学和分子特征

sp. Nov. (Nematoda: Pratylenchidae) on Raspberries in North Italy with a Morphometrical and Molecular Characterization.

作者信息

Troccoli Alberto, Fanelli Elena, Castillo Pablo, Liébanas Gracia, Cotroneo Alba, De Luca Francesca

机构信息

Consiglio Nazionale delle Ricerche (CNR), Istituto per la Protezione Sostenibile delle Piante (IPSP), v. G. Amendola, 122/D, 70126 Bari, Italy.

Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avda. Menéndez Pidal s/n, 14004 Córdoba, Spain.

出版信息

Plants (Basel). 2021 May 26;10(6):1068. doi: 10.3390/plants10061068.

Abstract

Root-lesion nematode species rank third only to root-knot and cyst nematodes as having the greatest economic impact on crops worldwide. A survey of plant-parasitic nematodes associated with decaying raspberries ( sp.) in northern Italy revealed that root-lesion nematodes were the most frequently occurring species among other phytonematodes. Several species have been associated with sp. in Canada (Quebec, British Columbia) and USA (North Carolina, Maryland, New Jersey) including and In the roots and rhizosphere of symptomatic raspberries, nematodes of two spp. were detected. Detailed morphometrics of the two root-lesion nematode isolates were consistent with and with an undescribed species. The extracted nematodes were observed and measured as live and fixed materials and subsequently identified by integrative taxonomy (morphometrically and molecularly). The latter species is described herein as sp. nov., resulting morphometrically closest to and phylogenetically to . The molecular identification of sp. nov. was carried out by sequencing the ITS region, D2-D3 expansion domains of the 28S rRNA gene and a partial region of the nuclear gene. ITS-RFLP and sequence analyses revealed that sp. nov. had species-specific restriction profiles with no corresponding sequences present in the database. The phylogenetic relationships with ITS and D2-D3 sequences placed the sp. nov. in a clade with and . This research confirms the occurrence of cryptic biodiversity within the genus as well as the need for an integrative approach to the identification of species.

摘要

根腐线虫种类对全球农作物造成的经济影响仅次于根结线虫和孢囊线虫,位列第三。一项对意大利北部与腐烂覆盆子(属)相关的植物寄生线虫的调查显示,根腐线虫是其他植物线虫中最常见的种类。在加拿大(魁北克、不列颠哥伦比亚)和美国(北卡罗来纳、马里兰、新泽西),有几种线虫与属相关,包括和。在有症状的覆盆子的根和根际中,检测到了两个种的线虫。对这两种根腐线虫分离物的详细形态测量与和一个未描述的种一致。提取的线虫作为活体和固定材料进行观察和测量,随后通过综合分类法(形态学和分子学)进行鉴定。本文将后一个种描述为新种,其形态测量结果最接近,系统发育上最接近。通过对ITS区域、28S rRNA基因的D2-D3扩展域和核基因的一个部分区域进行测序,对新种进行了分子鉴定。ITS-RFLP和序列分析表明,新种具有物种特异性的限制性图谱,数据库中没有相应序列。基于ITS和D2-D3序列的系统发育关系将新种置于一个与和的进化枝中。这项研究证实了属内存在隐性生物多样性,以及采用综合方法鉴定种的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b79/8226564/c5cd01b59f81/plants-10-01068-g001.jpg

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