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多维同步辐射 X 射线断层扫描的深度去噪,无需高质量参考数据。

Deep denoising for multi-dimensional synchrotron X-ray tomography without high-quality reference data.

机构信息

Centrum Wiskunde and Informatica, Amsterdam, The Netherlands.

Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland.

出版信息

Sci Rep. 2021 Jun 4;11(1):11895. doi: 10.1038/s41598-021-91084-8.

Abstract

Synchrotron X-ray tomography enables the examination of the internal structure of materials at submicron spatial resolution and subsecond temporal resolution. Unavoidable experimental constraints can impose dose and time limits on the measurements, introducing noise in the reconstructed images. Convolutional neural networks (CNNs) have emerged as a powerful tool to remove noise from reconstructed images. However, their training typically requires collecting a dataset of paired noisy and high-quality measurements, which is a major obstacle to their use in practice. To circumvent this problem, methods for CNN-based denoising have recently been proposed that require no separate training data beyond the already available noisy reconstructions. Among these, the Noise2Inverse method is specifically designed for tomography and related inverse problems. To date, applications of Noise2Inverse have only taken into account 2D spatial information. In this paper, we expand the application of Noise2Inverse in space, time, and spectrum-like domains. This development enhances applications to static and dynamic micro-tomography as well as X-ray diffraction tomography. Results on real-world datasets establish that Noise2Inverse is capable of accurate denoising and enables a substantial reduction in acquisition time while maintaining image quality.

摘要

同步加速器 X 射线断层扫描能够以亚微米空间分辨率和亚秒时间分辨率检查材料的内部结构。不可避免的实验限制会对测量施加剂量和时间限制,从而在重建图像中引入噪声。卷积神经网络 (CNN) 已成为从重建图像中去除噪声的强大工具。然而,它们的训练通常需要收集一组配对的噪声和高质量测量数据集,这是它们在实际中应用的主要障碍。为了规避这个问题,最近提出了基于 CNN 的去噪方法,这些方法除了已经可用的噪声重建之外,不需要单独的训练数据。其中,Noise2Inverse 方法专门针对层析成像和相关的逆问题而设计。迄今为止,Noise2Inverse 的应用仅考虑了 2D 空间信息。在本文中,我们扩展了 Noise2Inverse 在空间、时间和类光谱域中的应用。这一发展增强了对静态和动态微层析成像以及 X 射线衍射层析成像的应用。对真实数据集的结果表明,Noise2Inverse 能够实现准确的去噪,并能够在保持图像质量的同时大大减少采集时间。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e5b/8178391/a6fd98000b04/41598_2021_91084_Fig1_HTML.jpg

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