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生态毒理学知识库:一个经过精心整理的具有生态相关性的毒性测试数据库,旨在支持环境研究和风险评估。

The ECOTOXicology Knowledgebase: A Curated Database of Ecologically Relevant Toxicity Tests to Support Environmental Research and Risk Assessment.

机构信息

Office of Research and Development, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, US Environmental Protection Agency, Duluth, Minnesota.

General Dynamics Information Technology, Duluth, Minnesota, USA.

出版信息

Environ Toxicol Chem. 2022 Jun;41(6):1520-1539. doi: 10.1002/etc.5324. Epub 2022 Apr 26.

Abstract

The need for assembled existing and new toxicity data has accelerated as the amount of chemicals introduced into commerce continues to grow and regulatory mandates require safety assessments for a greater number of chemicals. To address this evolving need, the ECOTOXicology Knowledgebase (ECOTOX) was developed starting in the 1980s and is currently the world's largest compilation of curated ecotoxicity data, providing support for assessments of chemical safety and ecological research through systematic and transparent literature review procedures. The recently released version of ECOTOX (Ver 5, www.epa.gov/ecotox) provides single-chemical ecotoxicity data for over 12,000 chemicals and ecological species with over one million test results from over 50,000 references. Presented is an overview of ECOTOX, detailing the literature review and data curation processes within the context of current systematic review practices and discussing how recent updates improve the accessibility and reusability of data to support the assessment, management, and research of environmental chemicals. Relevant and acceptable toxicity results are identified from studies in the scientific literature, with pertinent methodological details and results extracted following well-established controlled vocabularies and newly extracted toxicity data added quarterly to the public website. Release of ECOTOX, Ver 5, included an entirely redesigned user interface with enhanced data queries and retrieval options, visualizations to aid in data exploration, customizable outputs for export and use in external applications, and interoperability with chemical and toxicity databases and tools. This is a reliable source of curated ecological toxicity data for chemical assessments and research and continues to evolve with accessible and transparent state-of-the-art practices in literature data curation and increased interoperability to other relevant resources. Environ Toxicol Chem 2022;41:1520-1539. © 2022 SETAC. This article has been contributed to by US Government employees and their work is in the public domain in the USA.

摘要

随着进入商业领域的化学品数量持续增长,以及监管要求对更多化学品进行安全评估,对已有的和新的毒性数据进行整合的需求也在加速。为了满足这一不断发展的需求,从 20 世纪 80 年代开始开发了 ECOTOXicology Knowledgebase(ECOTOX),它目前是世界上最大的经过精心整理的生态毒性数据汇编,通过系统和透明的文献综述程序,为化学品安全评估和生态研究提供支持。最近发布的 ECOTOX 版本(Ver 5,www.epa.gov/ecotox)提供了超过 12000 种化学物质和生态物种的单一化学物质生态毒性数据,这些数据来自 5 万多份参考文献中的超过 100 万次测试结果。本文概述了 ECOTOX,详细介绍了在当前系统综述实践背景下的文献综述和数据整理过程,并讨论了最近的更新如何提高数据的可访问性和可重用性,以支持环境化学品的评估、管理和研究。从科学文献中的研究中确定了相关和可接受的毒性结果,并按照既定的受控词汇表提取相关方法学细节和结果,新提取的毒性数据每季度添加到公共网站上。发布的 ECOTOX,Ver 5,包括一个全新设计的用户界面,具有增强的数据查询和检索选项、有助于数据探索的可视化效果、可定制的输出,用于外部应用程序的导出和使用,以及与化学物质和毒性数据库和工具的互操作性。这是一个经过精心整理的生态毒性数据可靠来源,可用于化学评估和研究,并继续通过可访问和透明的文献数据整理最新实践以及与其他相关资源的增强互操作性来发展。Environ Toxicol Chem 2022;41:1520-1539。 © 2022 SETAC。本文由美国政府雇员贡献,其工作在美国属于公有领域。

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