• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

空间转录组学揭示了年龄相关的再生能力下降的代谢变化基础。

Spatial transcriptomics reveals metabolic changes underly age-dependent declines in digit regeneration.

机构信息

Department of Orthopaedics, Johns Hopkins University, Baltimore, United States.

Department of Surgery, Tulane School of Medicine, New Orleans, United States.

出版信息

Elife. 2022 May 26;11:e71542. doi: 10.7554/eLife.71542.

DOI:10.7554/eLife.71542
PMID:35616636
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9135401/
Abstract

De novo limb regeneration after amputation is restricted in mammals to the distal digit tip. Central to this regenerative process is the blastema, a heterogeneous population of lineage-restricted, dedifferentiated cells that ultimately orchestrates regeneration of the amputated bone and surrounding soft tissue. To investigate skeletal regeneration, we made use of spatial transcriptomics to characterize the transcriptional profile specifically within the blastema. Using this technique, we generated a gene signature with high specificity for the blastema in both our spatial data, as well as other previously published single-cell RNA-sequencing transcriptomic studies. To elucidate potential mechanisms distinguishing regenerative from non-regenerative healing, we applied spatial transcriptomics to an aging model. Consistent with other forms of repair, our digit amputation mouse model showed a significant impairment in regeneration in aged mice. Contrasting young and aged mice, spatial analysis revealed a metabolic shift in aged blastema associated with an increased bioenergetic requirement. This enhanced metabolic turnover was associated with increased hypoxia and angiogenic signaling, leading to excessive vascularization and altered regenerated bone architecture in aged mice. Administration of the metabolite oxaloacetate decreased the oxygen consumption rate of the aged blastema and increased WNT signaling, leading to enhanced in vivo bone regeneration. Thus, targeting cell metabolism may be a promising strategy to mitigate aging-induced declines in tissue regeneration.

摘要

肢体切除后的新生在哺乳动物中仅限于远端指端。这个再生过程的核心是芽基,它是一种异质的、谱系受限的去分化细胞群体,最终协调了被切除的骨骼和周围软组织的再生。为了研究骨骼再生,我们利用空间转录组学来专门描述芽基中的转录谱。使用这项技术,我们在我们的空间数据以及其他以前发表的单细胞 RNA 测序转录组学研究中生成了一个对芽基具有高特异性的基因特征。为了阐明区分再生和非再生愈合的潜在机制,我们将空间转录组学应用于衰老模型。与其他修复形式一致,我们的指切除小鼠模型显示在老年小鼠中再生能力显著受损。与年轻和老年小鼠相比,空间分析揭示了与增加的生物能需求相关的老年芽基中的代谢转变。这种增强的代谢周转率与缺氧和血管生成信号的增加有关,导致老年小鼠中血管过度化和再生骨骼结构改变。代谢物草酰乙酸的给药降低了老年芽基的耗氧率并增加了 WNT 信号,导致体内骨再生增强。因此,靶向细胞代谢可能是减轻组织再生中与年龄相关的下降的一种有前途的策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/5f266bca20b5/elife-71542-sa2-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/50a9c960f015/elife-71542-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/a3ee1a201c58/elife-71542-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/6ff714d83e60/elife-71542-fig1-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/08319f9b6c9f/elife-71542-fig1-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/93d0e4ea35d4/elife-71542-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/7cd96ddd145a/elife-71542-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/e3ed5143f46b/elife-71542-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/f269499299b2/elife-71542-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/111faf41ca5c/elife-71542-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/e550dfb6fd6a/elife-71542-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/9819e977a6f0/elife-71542-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/6ecc7598766f/elife-71542-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/5f266bca20b5/elife-71542-sa2-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/50a9c960f015/elife-71542-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/a3ee1a201c58/elife-71542-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/6ff714d83e60/elife-71542-fig1-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/08319f9b6c9f/elife-71542-fig1-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/93d0e4ea35d4/elife-71542-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/7cd96ddd145a/elife-71542-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/e3ed5143f46b/elife-71542-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/f269499299b2/elife-71542-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/111faf41ca5c/elife-71542-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/e550dfb6fd6a/elife-71542-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/9819e977a6f0/elife-71542-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/6ecc7598766f/elife-71542-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc33/9135401/5f266bca20b5/elife-71542-sa2-fig1.jpg

相似文献

1
Spatial transcriptomics reveals metabolic changes underly age-dependent declines in digit regeneration.空间转录组学揭示了年龄相关的再生能力下降的代谢变化基础。
Elife. 2022 May 26;11:e71542. doi: 10.7554/eLife.71542.
2
Proximal digit tip amputation initiates simultaneous blastema and transient fibrosis formation and results in partial regeneration.近端指端截断会同时引发芽基和短暂纤维化的形成,从而导致部分再生。
Wound Repair Regen. 2021 Jan;29(1):196-205. doi: 10.1111/wrr.12856. Epub 2020 Aug 21.
3
Blastema formation and periosteal ossification in the regenerating adult mouse digit.成年小鼠再生指中芽基的形成和骨膜骨化
Wound Repair Regen. 2018 May;26(3):263-273. doi: 10.1111/wrr.12666. Epub 2018 Oct 16.
4
Mouse Digit Tip Regeneration Is Mechanical Load Dependent.鼠标指尖再生依赖于机械负荷。
J Bone Miner Res. 2022 Feb;37(2):312-322. doi: 10.1002/jbmr.4470. Epub 2021 Dec 7.
5
Transcriptomic analysis of bone and fibrous tissue morphogenesis during digit tip regeneration in the adult mouse.转录组分析成年鼠趾尖再生过程中骨骼和纤维组织形态发生
FASEB J. 2020 Jul;34(7):9740-9754. doi: 10.1096/fj.202000330R. Epub 2020 Jun 7.
6
Epimorphic regeneration of the mouse digit tip is finite.小鼠指尖的再生是有限的。
Stem Cell Res Ther. 2022 Feb 7;13(1):62. doi: 10.1186/s13287-022-02741-2.
7
Adult Mouse Digit Amputation and Regeneration: A Simple Model to Investigate Mammalian Blastema Formation and Intramembranous Ossification.成年小鼠指趾截肢与再生:用于研究哺乳动物芽基形成和膜内成骨的简单模型
J Vis Exp. 2019 Jul 12(149). doi: 10.3791/59749.
8
SDF-1α/CXCR4 signaling mediates digit tip regeneration promoted by BMP-2.SDF-1α/CXCR4 信号转导介导 BMP-2 促进的指尖再生。
Dev Biol. 2013 Oct 1;382(1):98-109. doi: 10.1016/j.ydbio.2013.07.020. Epub 2013 Aug 2.
9
Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution.单细胞分辨率下小鼠指尖再生过程中的细胞异质性和谱系限制
Dev Cell. 2020 Feb 24;52(4):525-540.e5. doi: 10.1016/j.devcel.2020.01.026.
10
Wound healing and blastema formation in regenerating digit tips of adult mice.成年小鼠再生趾尖的创伤愈合和芽基形成。
Dev Biol. 2011 Feb 15;350(2):301-10. doi: 10.1016/j.ydbio.2010.11.035. Epub 2010 Dec 8.

引用本文的文献

1
Current Role and Future Frontiers of Spatial Transcriptomics in Genitourinary Cancers.空间转录组学在泌尿生殖系统癌症中的当前作用及未来前沿
Cancers (Basel). 2025 Aug 26;17(17):2774. doi: 10.3390/cancers17172774.
2
Advancing muscle aging and sarcopenia research through spatial transcriptomics.通过空间转录组学推进肌肉衰老和肌肉减少症研究。
Osteoporos Sarcopenia. 2025 Jun;11(2 Suppl):22-31. doi: 10.1016/j.afos.2025.05.002. Epub 2025 Jun 12.
3
Current cutting-edge omics techniques on musculoskeletal tissues and diseases.当前用于肌肉骨骼组织和疾病的前沿组学技术。

本文引用的文献

1
Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGF-β signaling.空间转录组学揭示了感觉神经通过调节 BMP/TGF-β 信号在保持颅缝线开放中的作用。
Proc Natl Acad Sci U S A. 2021 Oct 19;118(42). doi: 10.1073/pnas.2103087118.
2
The cellular and signaling dynamics of salamander limb regeneration.蝾螈肢体再生的细胞与信号传导动力学
Curr Opin Cell Biol. 2021 Dec;73:117-123. doi: 10.1016/j.ceb.2021.07.010. Epub 2021 Sep 11.
3
Mammalian Digit Tip Regeneration: Moving from Phenomenon to Molecular Mechanism.
Bone Res. 2025 Jun 9;13(1):59. doi: 10.1038/s41413-025-00442-z.
4
Advances in spatial transcriptomics and its application in the musculoskeletal system.空间转录组学的进展及其在肌肉骨骼系统中的应用。
Bone Res. 2025 May 16;13(1):54. doi: 10.1038/s41413-025-00429-w.
5
Characterization of regeneration initiating cells during Xenopus laevis tail regeneration.描述非洲爪蟾尾部再生过程中起始细胞的特征。
Genome Biol. 2024 Oct 1;25(1):251. doi: 10.1186/s13059-024-03396-3.
6
Spatial transcriptomics implicates impaired BMP signaling in NF1 fracture pseudarthrosis in murine and patient tissues.空间转录组学表明,BMP 信号受损与 NF1 骨折假关节形成在鼠类和患者组织中有关。
JCI Insight. 2024 Jul 11;9(16):e176802. doi: 10.1172/jci.insight.176802.
7
STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics.STimage - 1K4M:一个用于空间转录组学的组织病理学图像 - 基因表达数据集。
ArXiv. 2024 Jun 20:arXiv:2406.06393v2.
8
Spatiotemporal multi-omics: exploring molecular landscapes in aging and regenerative medicine.时空多组学:探索衰老与再生医学中的分子图谱。
Mil Med Res. 2024 May 27;11(1):31. doi: 10.1186/s40779-024-00537-4.
9
Developmental stage dependent effects of posterior and germline regeneration on sexual maturation in Platynereis dumerilii.发育阶段依赖性的后肠和生殖系再生对皮氏鱚性成熟的影响。
Dev Biol. 2024 Sep;513:33-49. doi: 10.1016/j.ydbio.2024.05.013. Epub 2024 May 24.
10
Modeling of age-related neurological disease: utility of zebrafish.与年龄相关的神经疾病建模:斑马鱼的效用
Front Aging Neurosci. 2024 May 3;16:1399098. doi: 10.3389/fnagi.2024.1399098. eCollection 2024.
哺乳动物指尖再生:从现象到分子机制。
Cold Spring Harb Perspect Biol. 2022 Jan 4;14(1):a040857. doi: 10.1101/cshperspect.a040857.
4
Wnt signaling related transcripts and their relationship to energy metabolism in C2C12 myoblasts under temperature stress.温度应激下C2C12成肌细胞中与Wnt信号相关的转录本及其与能量代谢的关系
PeerJ. 2021 Jun 14;9:e11625. doi: 10.7717/peerj.11625. eCollection 2021.
5
Metabolic regulation of skeletal cell fate and function in physiology and disease.代谢调节骨骼细胞命运和功能的生理和疾病。
Nat Metab. 2021 Jan;3(1):11-20. doi: 10.1038/s42255-020-00321-3. Epub 2021 Jan 4.
6
A new approach to analyzing regenerated bone quality in the mouse digit amputation model using semi-automatic processing of microCT data.一种在小鼠断指模型中使用微计算机断层扫描(microCT)数据半自动处理来分析再生骨质量的新方法。
Bone. 2021 Mar;144:115776. doi: 10.1016/j.bone.2020.115776. Epub 2020 Dec 2.
7
Cellular and molecular mechanisms that regulate mammalian digit tip regeneration.调控哺乳动物趾端再生的细胞和分子机制。
Open Biol. 2020 Sep;10(9):200194. doi: 10.1098/rsob.200194. Epub 2020 Sep 30.
8
Malic Enzyme Couples Mitochondria with Aerobic Glycolysis in Osteoblasts.苹果酸酶将成骨细胞中的线粒体与有氧糖酵解偶联。
Cell Rep. 2020 Sep 8;32(10):108108. doi: 10.1016/j.celrep.2020.108108.
9
The influence of mitochondrial-directed regulation of Wnt signaling on tumorigenesis.线粒体定向调控Wnt信号通路对肿瘤发生的影响。
Gastroenterol Rep (Oxf). 2020 Jun 15;8(3):215-223. doi: 10.1093/gastro/goaa025. eCollection 2020 Jun.
10
Molecular Mechanisms Contributing to Mesenchymal Stromal Cell Aging.导致间充质基质细胞衰老的分子机制。
Biomolecules. 2020 Feb 21;10(2):340. doi: 10.3390/biom10020340.