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人类在全新世欧洲期间的主要混合事件的时空模式。

The spatiotemporal patterns of major human admixture events during the European Holocene.

机构信息

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.

Broad Institute of Harvard and MIT, Cambridge, United States.

出版信息

Elife. 2022 May 30;11:e77625. doi: 10.7554/eLife.77625.

Abstract

Recent studies have shown that admixture has been pervasive throughout human history. While several methods exist for dating admixture in contemporary populations, they are not suitable for sparse, low coverage ancient genomic data. Thus, we developed that leverages ancestry covariance patterns across the genome of a single individual to infer the timing of admixture. provides reliable estimates under various demographic scenarios and outperforms available methods for ancient DNA applications. Using on~1100 ancient genomes from sixteen regions in Europe and west Asia, we reconstruct the chronology of the formation of the ancestral populations and the fine-scale details of the spread of Neolithic farming and Steppe pastoralist-related ancestry across Europe. By studying the genetic formation of Anatolian farmers, we infer that gene flow related to Iranian Neolithic farmers occurred before 9600 BCE, predating the advent of agriculture in Anatolia. Contrary to the archaeological evidence, we estimate that early Steppe pastoralist groups (Yamnaya and Afanasievo) were genetically formed more than a millennium before the start of Steppe pastoralism. Our analyses provide new insights on the origins and spread of farming and Indo-European languages, highlighting the power of genomic dating methods to elucidate the legacy of human migrations.

摘要

最近的研究表明,混合在人类历史中一直普遍存在。虽然有几种方法可以用于确定当代人群中的混合时间,但这些方法不适用于稀疏、覆盖度低的古代基因组数据。因此,我们开发了一种方法,该方法利用单个个体基因组中的祖先协方差模式来推断混合的时间。在各种人口统计场景下,提供了可靠的估计值,并在古代 DNA 应用中优于现有方法。我们使用来自欧洲和西亚 16 个地区的 1100 多个古代基因组,重建了祖先群体形成的时间顺序以及新石器时代农业和草原牧民相关祖先在欧洲的传播的详细信息。通过研究安纳托利亚农民的遗传形成,我们推断与伊朗新石器时代农民有关的基因流动发生在公元前 9600 年之前,早于安纳托利亚农业的出现。与考古证据相反,我们估计早期草原牧民群体(Yamnaya 和 Afanasievo)在草原牧民开始之前一个多世纪就已经在遗传上形成了。我们的分析为农业和印欧语言的起源和传播提供了新的见解,突出了基因组定年方法阐明人类迁移遗产的力量。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bfa/9293011/b9689d75ec14/elife-77625-fig1.jpg

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