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从牛粪中分离得到的肠道奥尔森菌(Olsenella intestinalis)新种。

Olsenella intestinalis sp. nov., isolated from cow feces.

机构信息

Biological Resource Center/Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology, Jeongeup, 56212, Republic of Korea.

Department of Integrative Food, Bioscience and Biotechnology, Chonnam National University, Gwangju, 61186, Republic of Korea.

出版信息

Arch Microbiol. 2022 Jun 10;204(7):384. doi: 10.1007/s00203-022-03017-2.

Abstract

A Gram-stain-negative, anaerobic, non-motile, rod-shaped bacterium, designated as BGYT1, was isolated from the feces of a cow in Andong, Republic of Korea. It was studied using a polyphasic method to determine its taxonomic position. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain BGYT1 formed a lineage within the genus Olsenella and was most closely related to O. umbonate KCTC 15140 (98.2%). The complete genome sequence of strain BGYT1 was 2,476,083 bp long with a G + C content of 66.9 mol% and contained 1835 genes and 8 contigs. The N50 value was 604,117 bp. There were 50 tRNAs, 6 rRNAs (5S, 16S, 23S), 1778 CDSs and 2 BGCs and 1 tmRNA. The values for ANI (76.8%), AAI (67.3%), and dDDH (22.2%) compared to the closest related species were all below the threshold for bacterial species delineation. In addition, genes encoding the cell wall degrading enzymes such as chitinases, β-1,3 glucanases, and proteases were also detected. The strain was able to grow at pH 6.0-8.0 (optimum, pH 7.0), in the presence of 0.5-1.5% NaCl (optimum, 0.5%, w/v) and at the temperature range of 35-40 °C (optimum, 35 °C). The predominant fatty acids were C DMA (20.2%), C (20.2%), C (10.5%) and C cis 9 (17.0%). The polar lipids consisted of an unidentified phospholipid, four unidentified glycolipids and three unidentified lipids. Based on its phenotypic analyses, phylogenetic and physiological characteristics, strain BGYT1 represented a novel species within the genus Olsenella, for which the name Olsenella intestinalis sp. nov. is proposed. The type strain is BGYT1 (= KCTC 25379 = GDMCC 1.3011).

摘要

一株革兰氏阴性、厌氧、非运动、杆状细菌,被命名为 BGYT1,从韩国安洞的一头奶牛的粪便中分离得到。采用多相方法对其进行了研究,以确定其分类地位。基于 16S rRNA 基因序列的系统发育分析表明,菌株 BGYT1 形成了 Olsenella 属内的一个谱系,与 O. umbonate KCTC 15140(98.2%)最为密切相关。菌株 BGYT1 的全基因组序列长 2,476,083 bp,G+C 含量为 66.9 mol%,包含 1835 个基因和 8 个基因片段。N50 值为 604,117 bp。有 50 个 tRNA、6 个 rRNA(5S、16S、23S)、1778 个 CDS 和 2 个 BGCs 和 1 个 tmRNA。与最接近的相关种相比,ANI(76.8%)、AAI(67.3%)和 dDDH(22.2%)的值均低于细菌种划分的阈值。此外,还检测到了几丁质酶、β-1,3 葡聚糖酶和蛋白酶等细胞壁降解酶的编码基因。该菌株能够在 pH 6.0-8.0(最佳,pH 7.0)、0.5-1.5% NaCl(最佳,0.5%,w/v)和 35-40°C(最佳,35°C)的温度范围内生长。优势脂肪酸为 C DMA(20.2%)、C(20.2%)、C(10.5%)和 C cis 9(17.0%)。极性脂类由一种未鉴定的磷脂、四种未鉴定的糖脂和三种未鉴定的脂类组成。基于其表型分析、系统发育和生理特征,菌株 BGYT1 代表 Olsenella 属中的一个新种,命名为 Olsenella intestinalis sp. nov.。模式菌株为 BGYT1(=KCTC 25379=GDMCC 1.3011)。

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