Siddiqi Muhammad Zubair, Lee Soon-Youl, Yeon Jun Mo, Im Wan-Taek
Department of Biotechnology, Hankyong National University, 327 Jungang-Roo, Anseong-Si, Gyeonggi-Do, 17579, Republic of Korea.
AceEMzyme Co., Ltd., Academic Industry Cooperation, Room 403, 327 Jungang-Ro, Anseong-Si, Gyeonggi-Do, 17579, Republic of Korea.
Curr Microbiol. 2023 Feb 2;80(3):92. doi: 10.1007/s00284-022-03162-3.
A Gram-staining-positive, catalase positive and oxidase negative, non-motile, non-flagellated, and oval-shaped bacterium, was designated as I2-34, isolated from wetland in Soul South Korea. Colonies were round, entire, raised, and cream colored after two days of incubation on R2A agar plates at 25 °C. Based on genomes (both 16S rRNA gene and draft genome) sequence analysis, strain I2-34 belongs to the genus Arthrobacter and was most closely related to Arthrobacter deserti YIM CS25 (98.0%). The strain I2-34 had a circular genome with length of 5,186,447 base pairs (67 contigs) and 4830 total genes. Out of 4696 were protein-coding genes, 54 tRNA and 4 rRNA genes. The chemotaxonomic analysis indicates iso-C, anteiso-C, and anteisoC as major fatty acids, phosphatidylglycerol (PG), diphosphatidylglycerol (DPG), and two unidentified glycolipids (GL1, GL2) as major polar lipids. The predominant quinone was MK-8(H). The peptidoglycan type was A3α with an. L-Lys-L-Ala interpeptide bridge. Thus, the experimental data demonstrated here show that the novel isolate shares the similar major fatty acids, major polar lipid PG, DPG, and GLs, major and major quinone MK8-(H) with the described members of the genus Arthrobacter. However, the low 16S rRNA gene sequence (98.0%), and some physiological and biochemical characteristics differentiate the I2-34 from its closest phylogenetic neighbors. As a result, the isolate represents a novel species in within the genus Arthrobacter and family Micrococcaceae for which the name Arthrobacter hankyongi sp. nov. is proposed. The type strain is I2-34 (= KACC 22217, LMG 32197).
从韩国首尔湿地分离出的一株革兰氏染色阳性、过氧化氢酶阳性、氧化酶阴性、无运动性、无鞭毛且呈椭圆形的细菌,被命名为I2 - 34。在25℃的R2A琼脂平板上培养两天后,菌落呈圆形、边缘整齐、凸起且为奶油色。基于基因组(16S rRNA基因和草图基因组)序列分析,菌株I2 - 34属于节杆菌属,与沙漠节杆菌YIM CS25关系最为密切(98.0%)。菌株I2 - 34有一个长度为5,186,447碱基对(67个重叠群)的环状基因组,共有4830个基因。其中4696个为蛋白质编码基因,54个tRNA基因和4个rRNA基因。化学分类分析表明,主要脂肪酸为异-C、anteiso-C和anteisoC,主要极性脂质为磷脂酰甘油(PG)、二磷脂酰甘油(DPG)和两种未鉴定的糖脂(GL1、GL2)。主要醌类为MK - 8(H)。肽聚糖类型为A3α,具有L - Lys - L - Ala肽间桥。因此,此处展示的实验数据表明,该新分离菌株与已描述的节杆菌属成员具有相似的主要脂肪酸、主要极性脂质PG、DPG和GLs、主要醌类MK8-(H)。然而,低16S rRNA基因序列(98.0%)以及一些生理生化特征使I2 - 34与其最接近的系统发育邻居有所不同。结果,该分离菌株代表了节杆菌属和微球菌科内的一个新物种,为此提出名为汉京节杆菌(Arthrobacter hankyongi sp. nov.)的名称。模式菌株为I2 - 34(= KACC 22217,LMG 32197)。