Input processing in the brain is mediated by phase synchronization and intrinsic neural timescales, both of which have been implicated in schizophrenia. Their relationship remains unclear, though. Recruiting a schizophrenia EEG sample from the B-SNIP consortium dataset ( = 134, 70 schizophrenia patients, 64 controls), we investigate phase synchronization, as measured by intertrial phase coherence (ITPC), and intrinsic neural timescales, as measured by the autocorrelation window (ACW) during both the rest and oddball-task states. The main goal of our paper was to investigate whether reported shifts from shorter to longer timescales are related to decreased ITPC. Our findings show (i) decreases in both theta and alpha ITPC in response to both standard and deviant tones; and (iii) a negative correlation of ITPC and ACW in healthy subjects while such correlation is no longer present in SCZ participants. Together, we demonstrate evidence of abnormally long intrinsic neural timescales (ACW) in resting-state EEG of schizophrenia as well as their dissociation from phase synchronization (ITPC). Our data suggest that, during input processing, the resting state's abnormally long intrinsic neural timescales tilt the balance of temporal segregation and integration towards the latter. That results in temporal imprecision with decreased phase synchronization in response to inputs. Our findings provide further evidence for a basic temporal disturbance in schizophrenia on the different timescales (longer ACW and shorter ITPC), which, in the future, might be able to explain common symptoms related to the temporal experience in schizophrenia, for example temporal fragmentation.