Department of Biological Science, College of Science and Engineering, Sangji University, Wonju, 26339, Republic of Korea.
Department of Environmental Engineering, College of Science and Technology, Korea University Sejong Campus, 2511 Sejong-ro, Sejong City, 30019, Republic of Korea.
Arch Microbiol. 2023 Dec 26;206(1):42. doi: 10.1007/s00203-023-03763-x.
During the study of microbial ecology of forest soil, two circular, white-colored bacterial colonies were isolated and labeled as strains TW38 and TW40. Both strains were catalase positive and oxidase negative. Strains TW38 and TW40 demonstrated growth within a temperature range of 10-37 °C and 18-37 °C, respectively, and thrived within a pH range of 5.5-9.0 and 6.0-8.0, respectively. Both strains grew at 0-2.0% (w/v) NaCl concentrations. The phylogenetic analysis indicated that strains TW38 and TW40 affiliated to the genus Paenibacillus, with the closest neighbors being Paenibacillus montanisoli RA17 (98.6%) and Paenibacillus arachidis E3 (95.4%), respectively. In both strains, the sole respiratory quinone was MK-7, the signature fatty acid was antiso-C, and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and phosphatidylcholine. The digital DNA-DNA hybridization and the average nucleotide identity values between TW38, TW40, and closest reference strains were < 29.0% and < 85.0%, respectively. The DNA G+C content of TW38 and TW40 was 54.5% and 57.1%, respectively. In general, the phylogenetic, genomics, chemotaxonomic, and phenotypic data support the differentiation of TW38 and TW40 from other closest members of the genus Paenibacillus. Thus, we conclude both strains TW38 and TW40 represent novel species of the genus Paenibacillus, for which the name Paenibacillus silvisoli sp. nov. and Paenibacillus humicola sp. nov. are proposed, respectively. The type strain of Paenibacillus silvisoli is TW38 (= KCTC 43468 = NBRC 116015) and type strain of Paenibacillus humicola is TW40 (= KCTC 43469 = NBRC 116016).
在森林土壤微生物生态学研究中,分离并标记了两个圆形、白色的细菌菌落,分别命名为菌株 TW38 和 TW40。这两株菌均为过氧化氢酶阳性,氧化酶阴性。菌株 TW38 和 TW40 的生长温度范围分别为 10-37°C 和 18-37°C,最适生长 pH 值范围分别为 5.5-9.0 和 6.0-8.0。两株菌均能在 0-2.0%(w/v)NaCl 浓度下生长。系统发育分析表明,菌株 TW38 和 TW40 隶属于类芽孢杆菌属,与近缘种的相似性最高的分别为山地芽孢杆菌 RA17(98.6%)和花生地芽孢杆菌 E3(95.4%)。在这两株菌中,唯一的呼吸醌都是 MK-7,特征性脂肪酸都是anteiso-C,主要极性脂都是双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和磷脂酰胆碱。TW38、TW40 与最接近的参考菌株的数字 DNA-DNA 杂交值和平均核苷酸同一性值均小于 29.0%和 85.0%。TW38 和 TW40 的 DNA G+C 含量分别为 54.5%和 57.1%。综合来看,系统发育、基因组学、化学分类学和表型数据支持 TW38 和 TW40 与类芽孢杆菌属的其他近缘种的区分。因此,我们推断这两株菌 TW38 和 TW40 代表了类芽孢杆菌属的新种,分别命名为土壤类芽孢杆菌(Paenibacillus silvisoli)和腐生类芽孢杆菌(Paenibacillus humicola)。土壤类芽孢杆菌的模式菌株为 TW38(=KCTC 43468=NBRC 116015),腐生类芽孢杆菌的模式菌株为 TW40(=KCTC 43469=NBRC 116016)。