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豆科根瘤菌三叶草生物型菌株WSM1325的全基因组序列,一年生地中海三叶草的有效微共生体

Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.

作者信息

Reeve Wayne, O'Hara Graham, Chain Patrick, Ardley Julie, Bräu Lambert, Nandesena Kemanthi, Tiwari Ravi, Copeland Alex, Nolan Matt, Han Cliff, Brettin Thomas, Land Miriam, Ovchinikova Galina, Ivanova Natalia, Mavromatis Konstantinos, Markowitz Victor, Kyrpides Nikos, Melino Vanessa, Denton Matthew, Yates Ron, Howieson John

出版信息

Stand Genomic Sci. 2010 Jun 15;2(3):347-56. doi: 10.4056/sigs.852027.

Abstract

Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from root nodules collected in 1993 from the Greek Island of Serifos. WSM1325 is produced commercially in Australia as an inoculant for a broad range of annual clovers of Mediterranean origin due to its superior attributes of saprophytic competence, nitrogen fixation and acid-tolerance. Here we describe the basic features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence for a microsymbiont of annual clovers. We reveal that its genome size is 7,418,122 bp encoding 7,232 protein-coding genes and 61 RNA-only encoding genes. This multipartite genome contains 6 distinct replicons; a chromosome of size 4,767,043 bp and 5 plasmids of size 828,924 bp, 660,973 bp, 516,088 bp, 350,312 bp and 294,782 bp.

摘要

三叶草根瘤菌三叶草生物变种是一种土壤栖息细菌,有能力成为多种一年生三叶草(苜蓿)物种的有效固氮微共生体。菌株WSM1325是一种需氧、能运动、不形成芽孢、革兰氏阴性杆菌,于1993年从希腊希俄斯岛采集的根瘤中分离得到。由于其在腐生能力、固氮和耐酸性方面的卓越特性,WSM1325在澳大利亚作为地中海起源的多种一年生苜蓿的接种剂进行商业化生产。在此,我们描述了该生物体的基本特征,以及完整的基因组序列和注释。这是一年生苜蓿微共生体的首个完整基因组序列。我们发现其基因组大小为7,۴۱۸,۱۲۲ bp,编码7,۲۳۲个蛋白质编码基因和61个仅编码RNA的基因。这个多分体基因组包含6个不同的复制子;一个大小为4,۷۶۷,۰۴۳ bp的染色体和5个大小分别为828,۹۲۴ bp、660,۹۷۳ bp、516,۰۸۸ bp、350,۳۱۲ bp和294,۷۸۲ bp的质粒。

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