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海洋纤维素和木聚糖降解菌 Glaciecola sp. 菌株 4H-3-7+YE-5 的全基因组序列。

Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5.

机构信息

Institute of Technical Microbiology, Hamburg University of Technology, Kasernenstr. 12, D-21073 Hamburg, Germany.

出版信息

J Bacteriol. 2011 Sep;193(17):4547-8. doi: 10.1128/JB.05468-11. Epub 2011 Jun 24.

DOI:10.1128/JB.05468-11
PMID:21705587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3165521/
Abstract

Glaciecola sp. strain 4H-3-7+YE-5 was isolated from subseafloor sediments at Suruga Bay in Japan and is capable of efficiently hydrolyzing cellulose and xylan. The complete genome sequence of Glaciecola sp. 4H-3-7+YE-5 revealed several genes encoding putatively novel glycoside hydrolases, offering a high potential for plant biomass degradation.

摘要

日本骏海湾海底沉积物中分离到一株能够高效水解纤维素和木聚糖的嗜冷菌 Glaciecola sp. strain 4H-3-7+YE-5，其全基因组序列中含有多个编码潜在新糖苷水解酶的基因，具有很强的植物生物质降解潜力。

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本文引用的文献

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2
Gene cloning, expression and characterization of a new cold-active and salt-tolerant endo-beta-1,4-xylanase from marine Glaciecola mesophila KMM 241.来自嗜冷嗜盐海洋嗜冷杆菌KMM 241的新型冷活性和耐盐内切-β-1,4-木聚糖酶的基因克隆、表达及特性分析
Appl Microbiol Biotechnol. 2009 Oct;84(6):1107-15. doi: 10.1007/s00253-009-2056-y. Epub 2009 Jun 9.
3
Glaciecola lipolytica sp. nov., isolated from seawater near Tianjin city, China.解脂嗜冷杆菌新种，从中国天津市附近的海水中分离得到。
Int J Syst Evol Microbiol. 2009 Jan;59(Pt 1):73-6. doi: 10.1099/ijs.0.000489-0.
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Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
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Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea.嗜琼脂冰川杆菌新种，一种来自韩国东海的可消化琼脂的海洋细菌。
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6
Glaciecola chathamensis sp. nov., a novel marine polysaccharide-producing bacterium.新种查塔姆冰川菌（Glaciecola chathamensis sp. nov.），一种新型产海洋多糖细菌。
Int J Syst Evol Microbiol. 2006 Dec;56(Pt 12):2883-2886. doi: 10.1099/ijs.0.64413-0.
7
Glaciecola psychrophila sp. nov., a novel psychrophilic bacterium isolated from the Arctic.嗜冷冰川菌新种，一种从北极分离出的新型嗜冷细菌。
Int J Syst Evol Microbiol. 2006 Dec;56(Pt 12):2867-2869. doi: 10.1099/ijs.0.64575-0.
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Predominance of Roseobacter, Sulfitobacter, Glaciecola and Psychrobacter in seawater collected off Ushuaia, Argentina, Sub-Antarctica.在阿根廷火地岛附近、亚南极地区采集的海水中，玫瑰杆菌属、硫杆菌属、嗜冷杆菌属和嗜冷杆菌属占主导地位。
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