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魔角旋转 NMR 用于蛋白质结构测定的选择性分散同位素标记。

Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

机构信息

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.

出版信息

J Biomol NMR. 2013 Oct;57(2):129-39. doi: 10.1007/s10858-013-9773-3. Epub 2013 Aug 30.

Abstract

The power of nuclear magnetic resonance spectroscopy derives from its site-specific access to chemical, structural and dynamic information. However, the corresponding multiplicity of interactions can be difficult to tease apart. Complimentary approaches involve spectral editing on the one hand and selective isotope substitution on the other. Here we present a new "redox" approach to the latter: acetate is chosen as the sole carbon source for the extreme oxidation numbers of its two carbons. Consistent with conventional anabolic pathways for the amino acids, [1-(13)C] acetate does not label α carbons, labels other aliphatic carbons and the aromatic carbons very selectively, and labels the carboxyl carbons heavily. The benefits of this labeling scheme are exemplified by magic angle spinning spectra of microcrystalline immunoglobulin binding protein G (GB1): the elimination of most J-couplings and one- and two-bond dipolar couplings provides narrow signals and long-range, intra- and inter-residue, recoupling essential for distance constraints. Inverse redox labeling, from [2-(13)C] acetate, is also expected to be useful: although it retains one-bond couplings in the sidechains, the removal of CA-CO coupling in the backbone should improve the resolution of NCACX spectra.

摘要

核磁共振波谱学的威力源自其对化学、结构和动态信息的特异性获取。然而,相应的多种相互作用可能难以区分。互补的方法包括一方面的光谱编辑和另一方面的选择性同位素取代。在这里,我们提出了后者的一种新的“氧化还原”方法:选择醋酸盐作为其两个碳原子的极端氧化数的唯一碳源。与氨基酸的传统合成代谢途径一致,[1-(13)C]醋酸盐不会标记α碳原子,而是非常选择性地标记其他脂肪族碳原子和芳族碳原子,并强烈标记羧基碳原子。这种标记方案的优点在微晶免疫球蛋白结合蛋白 G(GB1)的魔角旋转光谱中得到了例证:消除了大多数 J 耦合和一、二键偶极耦合,提供了窄信号和长程、内和间残基的重新耦合,这对于距离约束是必不可少的。从[2-(13)C]醋酸盐进行的反向氧化还原标记也有望是有用的:尽管它在侧链中保留了单键耦合,但在骨架中去除 CA-CO 耦合应该可以提高 NCACX 光谱的分辨率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ba/3793012/b3c91d34bd02/nihms520303f1.jpg

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