Zeber-Lubecka Natalia, Kulecka Maria, Ambrozkiewicz Filip, Paziewska Agnieszka, Lechowicz Milosz, Konopka Ewa, Majewska Urszula, Borszewska-Kornacka Maria, Mikula Michal, Cukrowska Bozena, Ostrowski Jerzy
Department of Gastroenterology, Hepatology and Clinical Oncology, Medical Center for Postgraduate Education, Warsaw, Poland.
Neonatal and Intensive Care Department, Medical University of Warsaw, Warsaw, Poland.
PLoS One. 2016 Feb 26;11(2):e0150306. doi: 10.1371/journal.pone.0150306. eCollection 2016.
Recent advances in culture-independent approaches have enabled insights into the diversity, complexity, and individual variability of gut microbial communities.
To examine the effect of oral administration of Saccharomyces (S.) boulardii and mode of delivery on the intestinal microbial community in preterm infants.
Stool samples were collected from preterm newborns randomly divided into two groups: a probiotic-receiving group (n = 18) or a placebo group (n = 21). Samples were collected before probiotic intake (day 0), and after 2 and 6 weeks of supplementation. The composition of colonizing bacteria was assessed by 16S ribosomal RNA (rRNA) gene sequencing of fecal samples using the Ion 16S Metagenomics Kit and the Ion Torrent Personal Genome Machine platform.
A total of 11932257 reads were generated, and were clustered into 459, 187, and 176 operational taxonomic units at 0 days, 2 weeks, and 6 weeks, respectively. Of the 17 identified phyla, Firmicutes Actinobacteria, Proteobacteria, and Bacteroidetes were universal. The microbial community differed at day 0 compared with at 2 weeks and 6 weeks. There was a tendency for increased bacterial diversity at 2 weeks and 6 weeks compared with day 0, and infants with a gestational age of 31 weeks or higher presented increased bacterial diversity prior to S. boulardii administration. Firmicutes and Proteobacteria remained stable during the observation period, whereas Actinobacteria and Bacteroidetes increased in abundance, the latter particularly more sharply in vaginally delivered infants.
While the mode of delivery may influence the development of a microbial community, this study had not enough power to detect statistical differences between cohorts supplemented with probiotics, and in a consequence, to speculate on S. boulardii effect on gut microbiome composition in preterm newborns.
非培养方法的最新进展使人们能够深入了解肠道微生物群落的多样性、复杂性和个体变异性。
研究口服布拉酵母菌及其给药方式对早产儿肠道微生物群落的影响。
从随机分为两组的早产新生儿中收集粪便样本:益生菌接受组(n = 18)和安慰剂组(n = 21)。在摄入益生菌前(第0天)以及补充2周和6周后收集样本。使用Ion 16S宏基因组学试剂盒和Ion Torrent个人基因组机器平台,通过粪便样本的16S核糖体RNA(rRNA)基因测序评估定植细菌的组成。
共产生11932257条读数,分别在第0天、2周和6周聚类为459、187和176个可操作分类单元。在已鉴定的17个门中,厚壁菌门、放线菌门、变形菌门和拟杆菌门普遍存在。第0天的微生物群落与第2周和第6周不同。与第0天相比,第2周和第6周细菌多样性有增加的趋势,胎龄31周或以上的婴儿在服用布拉酵母菌之前细菌多样性增加。在观察期内,厚壁菌门和变形菌门保持稳定,而放线菌门和拟杆菌门丰度增加,后者在经阴道分娩的婴儿中增加尤为明显。
虽然分娩方式可能影响微生物群落的发育,但本研究没有足够的能力检测补充益生菌队列之间的统计学差异,因此无法推测布拉酵母菌对早产新生儿肠道微生物组组成的影响。