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ReLayNet:使用全卷积网络对黄斑光学相干断层扫描进行视网膜层和液体分割

ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks.

作者信息

Roy Abhijit Guha, Conjeti Sailesh, Karri Sri Phani Krishna, Sheet Debdoot, Katouzian Amin, Wachinger Christian, Navab Nassir

机构信息

Computer Aided Medical Procedures, Technische Universität München, Munich, Germany.

Artificial Intelligence in Medical Imaging (AI-Med), Department of Child and Adolescent Psychiatry, Ludwig-Maximilians-University, Munich, Germany.

出版信息

Biomed Opt Express. 2017 Jul 13;8(8):3627-3642. doi: 10.1364/BOE.8.003627. eCollection 2017 Aug 1.

DOI:10.1364/BOE.8.003627
PMID:28856040
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5560830/
Abstract

Optical coherence tomography (OCT) is used for non-invasive diagnosis of diabetic macular edema assessing the retinal layers. In this paper, we propose a new fully convolutional deep architecture, termed ReLayNet, for end-to-end segmentation of retinal layers and fluid masses in eye OCT scans. ReLayNet uses a contracting path of convolutional blocks (encoders) to learn a hierarchy of contextual features, followed by an expansive path of convolutional blocks (decoders) for semantic segmentation. ReLayNet is trained to optimize a joint loss function comprising of weighted logistic regression and Dice overlap loss. The framework is validated on a publicly available benchmark dataset with comparisons against five state-of-the-art segmentation methods including two deep learning based approaches to substantiate its effectiveness.

摘要

光学相干断层扫描(OCT)用于评估视网膜各层,以对糖尿病性黄斑水肿进行无创诊断。在本文中,我们提出了一种全新的全卷积深度架构,称为ReLayNet,用于对眼部OCT扫描中的视网膜各层和液体积聚进行端到端分割。ReLayNet使用卷积块的收缩路径(编码器)来学习上下文特征层次结构,随后是用于语义分割的卷积块扩展路径(解码器)。ReLayNet经过训练以优化由加权逻辑回归和骰子重叠损失组成的联合损失函数。该框架在一个公开可用的基准数据集上进行了验证,并与包括两种基于深度学习的方法在内的五种最新分割方法进行了比较,以证实其有效性。

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DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs.DeepLab:基于深度卷积网络、空洞卷积和全连接条件随机场的语义图像分割。
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Decreasing incidence of type 2 diabetes mellitus in the United States, 2007-2012: Epidemiologic findings from a large US claims database.2007 - 2012年美国2型糖尿病发病率下降:来自美国一个大型理赔数据库的流行病学研究结果
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