Department of Food Science, Cornell University, Ithaca, NY 14853, USA.
Department of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Int J Syst Evol Microbiol. 2021 May;71(5). doi: 10.1099/ijsem.0.004795.
A total of 27 isolates that could not be classified to the species level were obtained from soil samples from different locations in the contiguous United States and an agricultural water sample from New York. Whole-genome sequence-based average nucleotide identity blast (ANIb) showed that the 27 isolates form five distinct clusters; for each cluster, all draft genomes showed ANI values of <95 % similarity to each other and any currently described species, indicating that each cluster represents a novel species. Of the five novel species, three cluster with the clade and two cluster with . One of the novel species, designated sp. nov., contains two subclusters with an average ANI similarity of 94.9%, which were designated as subspecies. The proposed three novel species (including two subspecies) are sp. nov. (type strain FSL L7-0091=CCUG 74668=LMG 31917; maximum ANI 91.9 % to ), sp. nov. (type strain FSL L7-1519=CCUG 74666=LMG 31920; maximum ANI 87.4 % to subsp. ) and sp. nov. [subsp. (type strain FSL L7-1447=CCUG 74667=LMG 31919; maximum ANI 93.4 % to ) and subsp. (type strain FSL L7-0993=CCUG 74670=LMG 31918; maximum ANI 94.7 % to ). The two proposed novel species are sp. nov. (type strain FSL L7-1582=CCUG 74671=LMG 31921; maximum ANI value of 88.9 % to and 89.2 % to ) and sp. nov. (type strain FSL W9-0585=CCUG 74665=LMG 31922; maximum ANI value of 88.7 % to and 88.9 % to . ). is the first species isolated to date that is non-motile. All five of the novel species are non-haemolytic and negative for phosphatidylinositol-specific phospholipase C activity; the draft genomes lack the virulence genes found in pathogenicity island 1 (LIPI-1), and the internalin genes and , indicating that they are non-pathogenic.
从美国各地的土壤样本和纽约的农业水样中获得了总共 27 株无法分类到种水平的分离株。基于全基因组序列的平均核苷酸同一性blast(ANIb)显示,这 27 株分离株形成了五个不同的聚类;对于每个聚类,所有草案基因组之间的 ANI 值均<95%相似,与任何现有描述的种均不相似,表明每个聚类代表一个新种。在这五个新种中,有三个聚类与 分支聚类,有两个聚类与 分支聚类。其中一个新的 种,命名为 sp. nov.,包含两个亚聚类,平均 ANI 相似性为 94.9%,被指定为亚种。所提出的三个新的 种(包括两个亚种)分别是 sp. nov.(模式株 FSL L7-0091=CCUG 74668=LMG 31917;与 的最大 ANI 为 91.9%)、 sp. nov.(模式株 FSL L7-1519=CCUG 74666=LMG 31920;与 subsp. 的最大 ANI 为 87.4%)和 sp. nov. [subsp. (模式株 FSL L7-1447=CCUG 74667=LMG 31919;与 的最大 ANI 为 93.4%)和 subsp. (模式株 FSL L7-0993=CCUG 74670=LMG 31918;与 的最大 ANI 为 94.7%)。这两个新提出的 种是 sp. nov.(模式株 FSL L7-1582=CCUG 74671=LMG 31921;与 和 的最大 ANI 值分别为 88.9%和 89.2%)和 sp. nov.(模式株 FSL W9-0585=CCUG 74665=LMG 31922;与 和 的最大 ANI 值分别为 88.7%和 88.9%)。 是迄今为止分离到的第一个非运动性 种。所有五个新种均不溶血,磷脂酰肌醇特异性磷脂酶 C 活性阴性;草案基因组缺乏在致病性岛 1(LIPI-1)中发现的毒力基因,以及内部素基因 和 ,表明它们是非致病性的。