Suppr超能文献

高辛烷值烷烃:用于可扩展和交互式基因组学数据可视化的基于语法的工具包。

Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.

出版信息

IEEE Trans Vis Comput Graph. 2022 Jan;28(1):140-150. doi: 10.1109/TVCG.2021.3114876. Epub 2021 Dec 30.

Abstract

The combination of diverse data types and analysis tasks in genomics has resulted in the development of a wide range of visualization techniques and tools. However, most existing tools are tailored to a specific problem or data type and offer limited customization, making it challenging to optimize visualizations for new analysis tasks or datasets. To address this challenge, we designed Gosling-a grammar for interactive and scalable genomics data visualization. Gosling balances expressiveness for comprehensive multi-scale genomics data visualizations with accessibility for domain scientists. Our accompanying JavaScript toolkit called Gosling.js provides scalable and interactive rendering. Gosling.js is built on top of an existing platform for web-based genomics data visualization to further simplify the visualization of common genomics data formats. We demonstrate the expressiveness of the grammar through a variety of real-world examples. Furthermore, we show how Gosling supports the design of novel genomics visualizations. An online editor and examples of Gosling.js, its source code, and documentation are available at https://gosling.js.org.

摘要

基因组学中多样化的数据类型和分析任务的组合导致了广泛的可视化技术和工具的发展。然而,大多数现有的工具都是针对特定的问题或数据类型量身定制的,提供的定制选项有限,因此很难针对新的分析任务或数据集优化可视化效果。为了解决这个挑战,我们设计了 Gosling——一种用于交互式和可扩展的基因组学数据可视化的语法。Gosling 在为全面的多尺度基因组学数据可视化提供表达力的同时,也为领域科学家提供了可访问性。我们的配套 JavaScript 工具包 Gosling.js 提供了可扩展和交互式的渲染。Gosling.js 建立在现有的基于网络的基因组学数据可视化平台之上,进一步简化了常见基因组学数据格式的可视化。我们通过各种真实世界的例子展示了语法的表达力。此外,我们还展示了 Gosling 如何支持新型基因组学可视化的设计。在线编辑器和 Gosling.js 的示例、其源代码和文档可在 https://gosling.js.org 上获得。

相似文献

3
GenoREC: A Recommendation System for Interactive Genomics Data Visualization.GenoREC:交互式基因组学数据可视化推荐系统。
IEEE Trans Vis Comput Graph. 2023 Jan;29(1):570-580. doi: 10.1109/TVCG.2022.3209407. Epub 2022 Dec 21.
5
Multi-View Design Patterns and Responsive Visualization for Genomics Data.多视图设计模式与基因组学数据的响应式可视化
IEEE Trans Vis Comput Graph. 2023 Jan;29(1):559-569. doi: 10.1109/TVCG.2022.3209398. Epub 2022 Dec 21.

引用本文的文献

1
Informatics at the Frontier of Cancer Research.癌症研究前沿的信息学
Cancer Res. 2025 Aug 15;85(16):2967-2986. doi: 10.1158/0008-5472.CAN-24-2829.
3
6
Aardvark: Composite Visualizations of Trees, Time-Series, and Images.土豚:树状图、时间序列和图像的复合可视化
IEEE Trans Vis Comput Graph. 2025 Jan;31(1):1290-1300. doi: 10.1109/TVCG.2024.3456193. Epub 2024 Nov 25.
7
Learnable and Expressive Visualization Authoring Through Blended Interfaces.通过混合界面实现可学习且具表现力的可视化创作。
IEEE Trans Vis Comput Graph. 2025 Jan;31(1):459-469. doi: 10.1109/TVCG.2024.3456598. Epub 2024 Dec 3.
10
Visualizing metagenomic and metatranscriptomic data: A comprehensive review.宏基因组学和宏转录组学数据的可视化:全面综述
Comput Struct Biotechnol J. 2024 May 3;23:2011-2033. doi: 10.1016/j.csbj.2024.04.060. eCollection 2024 Dec.

本文引用的文献

3
Strategic vision for improving human health at The Forefront of Genomics.基因组学前沿改善人类健康的战略愿景。
Nature. 2020 Oct;586(7831):683-692. doi: 10.1038/s41586-020-2817-4. Epub 2020 Oct 28.
5
Kyrix-S: Authoring Scalable Scatterplot Visualizations of Big Data.Kyrix-S:大数据可扩展散点图可视化创作
IEEE Trans Vis Comput Graph. 2021 Feb;27(2):401-411. doi: 10.1109/TVCG.2020.3030372. Epub 2021 Jan 28.
9
Ultrastructural Details of Mammalian Chromosome Architecture.哺乳动物染色体结构的超微结构细节
Mol Cell. 2020 May 7;78(3):554-565.e7. doi: 10.1016/j.molcel.2020.03.003. Epub 2020 Mar 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验