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机器学习简介及其在风湿性疾病中的应用分析。

An introduction to machine learning and analysis of its use in rheumatic diseases.

机构信息

AMPEL BioSolutions and RILITE Research Institute, Charlottesville, VA, USA.

出版信息

Nat Rev Rheumatol. 2021 Dec;17(12):710-730. doi: 10.1038/s41584-021-00708-w. Epub 2021 Nov 2.


DOI:10.1038/s41584-021-00708-w
PMID:34728818
Abstract

Machine learning (ML) is a computerized analytical technique that is being increasingly employed in biomedicine. ML often provides an advantage over explicitly programmed strategies in the analysis of multidimensional information by recognizing relationships in the data that were not previously appreciated. As such, the use of ML in rheumatology is increasing, and numerous studies have employed ML to classify patients with rheumatic autoimmune inflammatory diseases (RAIDs) from medical records and imaging, biometric or gene expression data. However, these studies are limited by sample size, the accuracy of sample labelling, and absence of datasets for external validation. In addition, there is potential for ML models to overfit or underfit the data and, thereby, these models might produce results that cannot be replicated in an unrelated dataset. In this Review, we introduce the basic principles of ML and discuss its current strengths and weaknesses in the classification of patients with RAIDs. Moreover, we highlight the successful analysis of the same type of input data (for example, medical records) with different algorithms, illustrating the potential plasticity of this analytical approach. Altogether, a better understanding of ML and the future application of advanced analytical techniques based on this approach, coupled with the increasing availability of biomedical data, may facilitate the development of meaningful precision medicine for patients with RAIDs.

摘要

机器学习 (ML) 是一种计算机分析技术,在生物医学领域的应用越来越广泛。ML 通过识别数据中以前未被注意到的关系,在分析多维信息方面通常优于显式编程策略。因此,ML 在风湿病学中的应用正在增加,许多研究已经使用 ML 从病历和影像学、生物计量学或基因表达数据中对风湿性自身免疫性炎症性疾病 (RAIDs) 患者进行分类。然而,这些研究受到样本量、样本标记准确性和缺乏外部验证数据集的限制。此外,ML 模型存在过度拟合或欠拟合数据的可能性,因此这些模型可能会产生无法在不相关数据集重现的结果。在这篇综述中,我们介绍了 ML 的基本原理,并讨论了它在 RAIDs 患者分类中的当前优势和劣势。此外,我们还强调了不同算法对相同类型输入数据(例如,病历)的成功分析,说明了这种分析方法的潜在可塑性。总之,更好地理解 ML 以及基于该方法的先进分析技术的未来应用,加上生物医学数据的日益普及,可能有助于为 RAIDs 患者开发有意义的精准医学。

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本文引用的文献

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Disease-associated and patient-specific immune cell signatures in juvenile-onset systemic lupus erythematosus: patient stratification using a machine-learning approach.

Lancet Rheumatol. 2020-7-29

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