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本文引用的文献

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Evaluating short-term forecasting of COVID-19 cases among different epidemiological models under a Bayesian framework.基于贝叶斯框架评估不同流行病学模型下 COVID-19 病例的短期预测。
Gigascience. 2021 Feb 19;10(2). doi: 10.1093/gigascience/giab009.
2
What the Coronavirus Disease 2019 (COVID-19) Pandemic Has Reinforced: The Need for Accurate Data.《COVID-19 大流行所强化的问题:对准确数据的需求》
Clin Infect Dis. 2021 Mar 15;72(6):920-923. doi: 10.1093/cid/ciaa1686.
3
A data-driven network model for the emerging COVID-19 epidemics in Wuhan, Toronto and Italy.基于数据驱动的武汉、多伦多和意大利新冠疫情传播网络模型
Math Biosci. 2020 Aug;326:108391. doi: 10.1016/j.mbs.2020.108391. Epub 2020 Jun 1.
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Modeling epidemics using cellular automata.使用细胞自动机对流行病进行建模。
Appl Math Comput. 2007 Mar 1;186(1):193-202. doi: 10.1016/j.amc.2006.06.126. Epub 2006 Sep 15.
5
Insights into the transmission of respiratory infectious diseases through empirical human contact networks.通过经验性的人际接触网络洞察呼吸道传染病的传播。
Sci Rep. 2016 Aug 16;6:31484. doi: 10.1038/srep31484.
6
Influenza update: a review of currently available vaccines.流感最新情况:现有疫苗综述
P T. 2011 Oct;36(10):659-84.
7
High-resolution measurements of face-to-face contact patterns in a primary school.对一所小学中面对面接触模式的高分辨率测量。
PLoS One. 2011;6(8):e23176. doi: 10.1371/journal.pone.0023176. Epub 2011 Aug 16.
8
"Herd immunity": a rough guide.群体免疫:一个粗略的指南。
Clin Infect Dis. 2011 Apr 1;52(7):911-6. doi: 10.1093/cid/cir007.
9
A high-resolution human contact network for infectious disease transmission.高分辨率的人类接触网络用于传染病传播。
Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22020-5. doi: 10.1073/pnas.1009094108. Epub 2010 Dec 13.
10
Mathematical models of infectious disease transmission.传染病传播的数学模型。
Nat Rev Microbiol. 2008 Jun;6(6):477-87. doi: 10.1038/nrmicro1845.

网络 SIR 和环境 SIR:在缺乏数据的情况下有效的开源传染病模型。

NetworkSIR and EnvironmentalSIR: Effective, Open-Source Epidemic Modeling in the Absence of Data.

机构信息

The University of Texas at Dallas, Richardson, Texas.

University of Texas Southwestern Medical Center, Dallas, Texas.

出版信息

AMIA Annu Symp Proc. 2022 Feb 21;2021:1009-1018. eCollection 2021.

PMID:35308930
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8861737/
Abstract

The rapidly changing situation characterized by the COVID-19 pandemic highlighted a need for new epidemic modeling strategies. Due to an absence of computationally efficient models robust to paucity of reliable data, we developed NetworkSIR, a model capable of making predictions when only the approximate population density is known. We then extend NetworkSIR to capture the effect of indirect disease spread on the progression of an epidemic (EnvironmentalSIR).

摘要

由 COVID-19 大流行所呈现的快速变化局势凸显了对新的传染病建模策略的需求。由于缺乏对可靠数据不足具有稳健性的计算效率模型,我们开发了 NetworkSIR,这是一种仅在已知大致人口密度时就能进行预测的模型。然后,我们将 NetworkSIR 扩展到捕获间接疾病传播对传染病进展的影响(EnvironmentalSIR)。