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使用金字塔扩张密集U-Net的边界感知语义分割用于计算机断层扫描图像中的肺部分割

Boundary Aware Semantic Segmentation using Pyramid-dilated Dense U-Net for Lung Segmentation in Computed Tomography Images.

作者信息

Agnes S Akila

机构信息

Department of Computer Science and Engineering, GMR Institute of Technology, Rajam, Andhra Pradesh, India.

出版信息

J Med Phys. 2023 Apr-Jun;48(2):161-174. doi: 10.4103/jmp.jmp_1_23. Epub 2023 Jun 29.

Abstract

AIM

The main objective of this work is to propose an efficient segmentation model for accurate and robust lung segmentation from computed tomography (CT) images, even when the lung contains abnormalities such as juxtapleural nodules, cavities, and consolidation.

METHODOLOGY

A novel deep learning-based segmentation model, pyramid-dilated dense U-Net (PDD-U-Net), is proposed to directly segment lung regions from the whole CT image. The model is integrated with pyramid-dilated convolution blocks to capture and preserve multi-resolution spatial features effectively. In addition, shallow and deeper stream features are embedded in the nested U-Net structure at the decoder side to enhance the segmented output. The effect of three loss functions is investigated in this paper, as the medical image analysis method requires precise boundaries. The proposed PDD-U-Net model with shape-aware loss function is tested on the lung CT segmentation challenge (LCTSC) dataset with standard lung CT images and the lung image database consortium-image database resource initiative (LIDC-IDRI) dataset containing both typical and pathological lung CT images.

RESULTS

The performance of the proposed method is evaluated using Intersection over Union, dice coefficient, precision, recall, and average Hausdorff distance metrics. Segmentation results showed that the proposed PDD-U-Net model outperformed other segmentation methods and achieved a 0.983 dice coefficient for the LIDC-IDRI dataset and a 0.994 dice coefficient for the LCTSC dataset.

CONCLUSIONS

The proposed PDD-U-Net model with shape-aware loss function is an effective and accurate method for lung segmentation from CT images, even in the presence of abnormalities such as cavities, consolidation, and nodules. The model's integration of pyramid-dilated convolution blocks and nested U-Net structure at the decoder side, along with shape-aware loss function, contributed to its high segmentation accuracy. This method could have significant implications for the computer-aided diagnosis system, allowing for quick and accurate analysis of lung regions.

摘要

目的

本研究的主要目标是提出一种高效的分割模型,用于从计算机断层扫描(CT)图像中准确且稳健地分割肺部,即使肺部存在诸如胸膜下结节、空洞和实变等异常情况。

方法

提出了一种基于深度学习的新型分割模型,即金字塔扩张密集U-Net(PDD-U-Net),用于直接从整个CT图像中分割肺部区域。该模型集成了金字塔扩张卷积块,以有效捕获和保留多分辨率空间特征。此外,在解码器端将浅层和深层流特征嵌入到嵌套的U-Net结构中,以增强分割输出。由于医学图像分析方法需要精确的边界,本文研究了三种损失函数的效果。所提出的具有形状感知损失函数的PDD-U-Net模型在具有标准肺部CT图像的肺部CT分割挑战(LCTSC)数据集以及包含典型和病理肺部CT图像的肺部图像数据库联盟-图像数据库资源倡议(LIDC-IDRI)数据集上进行了测试。

结果

使用交并比、骰子系数、精度、召回率和平均豪斯多夫距离指标对所提出方法的性能进行了评估。分割结果表明,所提出的PDD-U-Net模型优于其他分割方法,在LIDC-IDRI数据集上实现了0.983的骰子系数,在LCTSC数据集上实现了0.994的骰子系数。

结论

所提出的具有形状感知损失函数的PDD-U-Net模型是一种从CT图像中分割肺部的有效且准确的方法,即使存在空洞、实变和结节等异常情况。该模型在解码器端集成了金字塔扩张卷积块和嵌套的U-Net结构,以及形状感知损失函数,有助于其实现高分割精度。该方法可能对计算机辅助诊断系统具有重要意义,能够快速准确地分析肺部区域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02f3/10419745/68ef975f2dd7/JMP-48-161-g001.jpg

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