Asfand-E-Yar Muhammad, Hashir Qadeer, Shah Asghar Ali, Malik Hafiz Abid Mahmood, Alourani Abdullah, Khalil Waqar
Department of Computer Science, CoE-AI, Center of Excellence Artificial Intelligence, Bahria University, Islamabad, Pakistan.
Department of Computer Science, Bahria University, Islamabad , Pakistan.
Sci Rep. 2024 Feb 19;14(1):4076. doi: 10.1038/s41598-024-54409-x.
Drug-to-drug interaction (DDIs) occurs when a patient consumes multiple drugs. Therefore, it is possible that any medication can influence other drugs' effectiveness. The drug-to-drug interactions are detected based on the interactions of chemical substructures, targets, pathways, and enzymes; therefore, machine learning (ML) and deep learning (DL) techniques are used to find the associated DDI events. The DL model, i.e., Convolutional Neural Network (CNN), is used to analyze the DDI. DDI is based on the 65 different drug-associated events, which is present in the drug bank database. Our model uses the inputs, which are chemical structures (i.e., smiles of drugs), enzymes, pathways, and the target of the drug. Therefore, for the multi-model CNN, we use several layers, activation functions, and features of drugs to achieve better accuracy as compared to traditional prediction algorithms. We perform different experiments on various hyperparameters. We have also carried out experiments on various iterations of drug features in different sets. Our Multi-Modal Convolutional Neural Network - Drug to Drug Interaction (MCNN-DDI) model achieved an accuracy of 90.00% and an AUPR of 94.78%. The results showed that a combination of the drug's features (i.e., chemical substructure, target, and enzyme) performs better in DDIs-associated events prediction than other features.
当患者同时服用多种药物时,就会发生药物相互作用(DDI)。因此,任何药物都有可能影响其他药物的疗效。药物相互作用是根据化学亚结构、靶点、信号通路和酶的相互作用来检测的;因此,机器学习(ML)和深度学习(DL)技术被用于寻找相关的药物相互作用事件。深度学习模型,即卷积神经网络(CNN),被用于分析药物相互作用。药物相互作用基于药物银行数据库中存在的65种不同的药物相关事件。我们的模型使用化学结构(即药物的SMILES)、酶、信号通路和药物靶点作为输入。因此,对于多模型CNN,我们使用多层、激活函数和药物特征,以实现比传统预测算法更高的准确率。我们对各种超参数进行了不同的实验。我们还对不同集合中药物特征的各种迭代进行了实验。我们的多模态卷积神经网络-药物相互作用(MCNN-DDI)模型的准确率达到了90.00%,AUPR为94.78%。结果表明,药物特征(即化学亚结构、靶点和酶)的组合在药物相互作用相关事件预测中比其他特征表现更好。