腺嘌呤 - 鸟嘌呤碱基配对核糖体RNA
Adenine-guanine base pairing ribosomal RNA.
作者信息
Traub W, Sussman J L
出版信息
Nucleic Acids Res. 1982 Apr 24;10(8):2701-8. doi: 10.1093/nar/10.8.2701.
Abstract
Analyses of secondary structures proposed for ribosomal RNA's show that, of the different kinds of base pairs directly adjoining the ends of postulated double-helical regions, only A-G with A at the 5' end significantly exceeds the number expected for a random base distribution. An A(syn)-G(trans) hydrogen-bonded basepair is proposed. This could fit at the end of an undistorted double helix, but would prevent further base stacking, thus favoring a break in the double helix to produce a non-linear tertiary structure.
摘要
对核糖体RNA二级结构的分析表明，在假定的双螺旋区域末端直接相邻的不同碱基对中，只有5'端为A的A-G碱基对比随机碱基分布预期的数量显著更多。有人提出了一种A（顺式）-G（反式）氢键配对的碱基对。它可以位于未扭曲的双螺旋末端，但会阻止进一步的碱基堆积，从而有利于双螺旋的断裂以产生非线性三级结构。
相似文献
1
Adenine-guanine base pairing ribosomal RNA.腺嘌呤 - 鸟嘌呤碱基配对核糖体RNA
Nucleic Acids Res. 1982 Apr 24;10(8):2701-8. doi: 10.1093/nar/10.8.2701.
2
Is there a special function for U.G basepairs in ribosomal RNA?核糖体RNA中的U.G碱基对有特殊功能吗？
Biochim Biophys Acta. 1990 Aug 27;1050(1-3):14-7. doi: 10.1016/0167-4781(90)90134-n.
3
The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent.RNA双链体中串联G.A错配碱基对基序的详细结构取决于上下文。
J Mol Biol. 1997 Aug 8;271(1):147-58. doi: 10.1006/jmbi.1997.1158.
4
Crystal structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG).A.G错配寡核苷酸d(CGCAAGCTGGCG)的晶体结构和序列依赖性构象
Proc Natl Acad Sci U S A. 1990 Sep;87(17):6693-7. doi: 10.1073/pnas.87.17.6693.
5
Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.短RNA螺旋上未配对末端核苷酸的热力学与较大RNA中螺旋末端的堆积相关。
J Mol Biol. 1999 Jul 30;290(5):967-82. doi: 10.1006/jmbi.1999.2906.
6
G.U base pairing motifs in ribosomal RNA.核糖体RNA中的G.U碱基配对基序。
RNA. 1995 Oct;1(8):807-14.
7
A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing.一种包含具有G·A和A·A非沃森-克里克碱基配对的内部环的弯曲RNA螺旋。
Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):12851-5. doi: 10.1073/pnas.93.23.12851.
8
The secondary structure of E. coli ribosomes and ribosomal RNA's: a spectrophotometric approach.大肠杆菌核糖体及核糖体RNA的二级结构：一种分光光度法研究
Nucleic Acids Res. 1975 Mar;2(3):373-81. doi: 10.1093/nar/2.3.373.
9
Structural and thermodynamic studies on the adenine.guanine mismatch in B-DNA.B型DNA中腺嘌呤-鸟嘌呤错配的结构与热力学研究
Nucleic Acids Res. 1990 Oct 11;18(19):5617-23. doi: 10.1093/nar/18.19.5617.
10
Detection of a guanine X adenine base pair in a decadeoxyribonucleotide by proton magnetic resonance spectroscopy.通过质子磁共振光谱法检测脱氧核糖核苷酸中的鸟嘌呤X腺嘌呤碱基对。
Proc Natl Acad Sci U S A. 1983 Jul;80(14):4263-5. doi: 10.1073/pnas.80.14.4263.
引用本文的文献
1
Characterizing hydrogen bonds in intact RNA from MS2 bacteriophage using magic angle spinning NMR.使用魔角旋转核磁共振表征来自MS2噬菌体的完整RNA中的氢键。
Biophys Rep (N Y). 2021 Sep 29;1(2):100027. doi: 10.1016/j.bpr.2021.100027. eCollection 2021 Dec 8.
2
Non-Watson-Crick RNA synthesis suited to origin functions.适合起始功能的非沃森-克里克RNA合成。
RNA. 2018 Jan;24(1):90-97. doi: 10.1261/rna.063974.117. Epub 2017 Oct 17.
3
Principles of ion recognition in RNA: insights from the group II intron structures.RNA 中的离子识别原理：来自 II 组内含子结构的见解。
RNA. 2014 Apr;20(4):516-27. doi: 10.1261/rna.043414.113. Epub 2014 Feb 25.
4
Size matters: a view of selenocysteine incorporation from the ribosome.大小很重要：核糖体硒代半胱氨酸掺入的观点。
Cell Mol Life Sci. 2006 Jan;63(1):73-81. doi: 10.1007/s00018-005-5402-y.
5
NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit.大肠杆菌50S核糖体亚基中构成L7/L12茎的RNA片段的核磁共振结构及镁离子结合情况
Nucleic Acids Res. 2005 Jun 6;33(10):3145-53. doi: 10.1093/nar/gki621. Print 2005.
6
Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning.16S核糖体RNA中心假结中螺旋2的碱基互补性对核糖体功能至关重要。
Nucleic Acids Res. 1998 Jan 15;26(2):549-53. doi: 10.1093/nar/26.2.549.
7
Transfer RNA docking pair model in the ribosomal pre- and post-translocational states.核糖体转位前后状态下的转运RNA对接配对模型。
Nucleic Acids Res. 1997 Mar 15;25(6):1254-64. doi: 10.1093/nar/25.6.1254.
8
Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects.RNA螺旋中的嘌呤-嘌呤错配：质子化G·A碱基对及次近邻效应的证据
Nucleic Acids Res. 1995 Jan 25;23(2):302-6. doi: 10.1093/nar/23.2.302.
9
Unusual structural features of the 5S ribosomal RNA from Streptococcus cremoris.来自嗜热链球菌的5S核糖体RNA的异常结构特征。
Nucleic Acids Res. 1983 Nov 11;11(21):7569-77. doi: 10.1093/nar/11.21.7569.
10
Detection of a guanine X adenine base pair in a decadeoxyribonucleotide by proton magnetic resonance spectroscopy.通过质子磁共振光谱法检测脱氧核糖核苷酸中的鸟嘌呤X腺嘌呤碱基对。
Proc Natl Acad Sci U S A. 1983 Jul;80(14):4263-5. doi: 10.1073/pnas.80.14.4263.
本文引用的文献
1
Base pairing in DNA.DNA中的碱基配对。
J Mol Biol. 1960 Dec;2:363-71. doi: 10.1016/s0022-2836(60)80047-2.
2
Evidence of common regularities in the composition of pentose nucleic acids.戊糖核酸组成中常见规律的证据。
Biochim Biophys Acta. 1955 Jul;17(3):367-76. doi: 10.1016/0006-3002(55)90385-1.
3
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.来自六个不同物种的小亚基核糖体RNA分子之间的二级结构比较。
Nucleic Acids Res. 1981 Aug 11;9(15):3621-40. doi: 10.1093/nar/9.15.3621.
4
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
5
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA.玉米叶绿体的核糖体RNA操纵子：23S核糖体DNA的核苷酸序列及其与大肠杆菌23S核糖体DNA的同源性。
Nucleic Acids Res. 1981 Jun 25;9(12):2853-69. doi: 10.1093/nar/9.12.2853.
6
Crystal structure of yeast tRNAAsp.酵母天冬氨酸转运核糖核酸的晶体结构
Nature. 1980 Dec 25;288(5792):669-74. doi: 10.1038/288669a0.
7
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.大肠杆菌16S核糖体RNA的结构组织。拓扑结构和二级结构。
Nucleic Acids Res. 1981 May 11;9(9):2153-72. doi: 10.1093/nar/9.9.2153.
8
A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.5S RNA独特的二级折叠模式与17种不同原核生物中能量最低的同源二级结构相对应。
Nucleic Acids Res. 1981 Apr 24;9(8):1885-904. doi: 10.1093/nar/9.8.1885.
9
Secondary structure of 16S ribosomal RNA.16S核糖体RNA的二级结构
Science. 1981 Apr 24;212(4493):403-11. doi: 10.1126/science.6163215.
10
Three-dimensional structure of Escherichia coli initiator tRNAfMet.大肠杆菌起始tRNAfMet的三维结构。
Nature. 1980 Jul 24;286(5771):346-51. doi: 10.1038/286346a0.
Zotero 插件