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一种用双脱氧核苷三磷酸对限制性片段进行测序的方法。

A method for sequencing restriction fragments with dideoxynucleoside triphosphates.

作者信息

Maat J, Smith A J

出版信息

Nucleic Acids Res. 1978 Dec;5(12):4537-45. doi: 10.1093/nar/5.12.4537.

DOI:10.1093/nar/5.12.4537
PMID:745989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC342771/
Abstract

A rapid enzymatic approach is described for the sequence analysis of a 5' terminally labelled restriction fragment. It involves limited nicking of the strands of the molecule throughout the sequence by pancreatic DNAase I. The 3' hydroxyl groups exposed by each nick are then used to prime chain extension by DNA polymerase I in four separate reactions. Each reaction uses one of the four chain terminating dideoxynucleoside triphosphates (ddNT-PSs), together with the four deoxynucleoside triphosphates (dNTPs). In a single reaction all the 3' ends are terminated in positions of the same base, which is different for each of the four reactions. When the products of these reactions are resolved by gel electrophoresis according to size, a sequence can be deduced from the pattern of radioactive bands. Sequences can be determined onwards from 10-20 residues from the 5' labelled end. The length of sequence which can be determined is only limited by the resolution of the gel.

摘要

本文描述了一种用于对5'末端标记的限制片段进行序列分析的快速酶促方法。该方法包括通过胰DNA酶I在整个序列中对分子链进行有限的切口。每个切口暴露的3'羟基随后用于在四个单独的反应中由DNA聚合酶I引发链延伸。每个反应使用四种链终止双脱氧核苷三磷酸(ddNTPs)中的一种,以及四种脱氧核苷三磷酸(dNTPs)。在单个反应中,所有3'末端都在相同碱基的位置终止,这在四个反应中的每一个中都是不同的。当这些反应的产物根据大小通过凝胶电泳分离时,可以从放射性条带的模式推断出序列。可以从5'标记末端的10 - 20个残基开始确定序列。能够确定的序列长度仅受凝胶分辨率的限制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/72b6f6bca5c1/nar00473-0076-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/8a49f08fd6df/nar00473-0074-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/44137c143e95/nar00473-0075-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/72b6f6bca5c1/nar00473-0076-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/8a49f08fd6df/nar00473-0074-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/44137c143e95/nar00473-0075-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a9e/342771/72b6f6bca5c1/nar00473-0076-a.jpg

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本文引用的文献

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J Biol Chem. 1970 Jan 10;245(1):39-45.
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The use of thin acrylamide gels for DNA sequencing.用于DNA测序的薄丙烯酰胺凝胶的使用。
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DNA sequencing with chain-terminating inhibitors.使用链终止抑制剂的DNA测序。
人类DNA中散布的重复聚合酶III转录单元的结构分析。
Nucleic Acids Res. 1981 Mar 11;9(5):1151-70.
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Demonstration of biological activity and nucleotide sequence of an in vitro synthesized clone of the Moloney murine sarcoma virus mos gene.莫洛尼鼠肉瘤病毒mos基因体外合成克隆的生物学活性及核苷酸序列的证明
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Sequence homologies between A subunits of Escherichia coli and Vibrio cholerae enterotoxins.大肠杆菌和霍乱弧菌肠毒素A亚基之间的序列同源性。
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