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甘蓝型油菜PYL基因家族的全基因组分析及响应非生物胁迫的PYL基因鉴定

Genome-Wide Analysis of the PYL Gene Family and Identification of PYL Genes That Respond to Abiotic Stress in Brassica napus.

作者信息

Di Feifei, Jian Hongju, Wang Tengyue, Chen Xueping, Ding Yiran, Du Hai, Lu Kun, Li Jiana, Liu Liezhao

机构信息

College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China.

Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China.

出版信息

Genes (Basel). 2018 Mar 12;9(3):156. doi: 10.3390/genes9030156.

Abstract

Abscisic acid (ABA) is an endogenous phytohormone that plays important roles in the regulation of plant growth, development, and stress responses. The pyrabactin resistance 1-like (PYR/PYL) protein is a core regulatory component of ABA signaling networks in plants. However, no details regarding this family in are available. Here, 46 were identified in the genome. Based on phylogenetic analysis, and belong to subfamily I, belong to subfamily II, and and belong to subfamily III. Analysis of conserved motifs showed that every subfamily contained four common motifs. By predicting cis-elements in the promoters, we found that all members contained hormone- and stress-related elements and that expression levels of most were relatively higher in seeds at the germination stage than those in other organs or at other developmental stages. Gene Ontology (GO) enrichment showed that genes mainly participate in responses to stimuli. To identify crucial mediating the response to abiotic stress in , expression changes in 14 genes were determined by quantitative real-time RT-PCR after drought, heat, and salinity treatments, and identified , , and in respond to abiotic stresses. The findings of this study lay a foundation for further investigations of genes in .

摘要

脱落酸(ABA)是一种内源性植物激素,在调节植物生长、发育和应激反应中发挥重要作用。类吡唑啉酮抗性1(PYR/PYL)蛋白是植物ABA信号网络的核心调控成分。然而,关于该家族在[具体物种]中的详细信息尚无报道。在此,在[具体物种]基因组中鉴定出46个[该家族成员]。基于系统发育分析,[部分成员]属于亚家族I,[部分成员]属于亚家族II,[部分成员]属于亚家族III。对[该家族成员]保守基序的分析表明,每个亚家族都包含四个共同基序。通过预测启动子中的顺式元件,我们发现所有[该家族成员]都含有与激素和应激相关的元件,并且大多数[该家族成员]在种子萌发阶段的表达水平相对高于其他器官或其他发育阶段。基因本体论(GO)富集分析表明,[该家族]基因主要参与对刺激的反应。为了鉴定介导[具体物种]对非生物胁迫反应的关键[该家族成员],在干旱、高温和盐处理后,通过定量实时RT-PCR测定了14个[该家族成员]基因的表达变化,并鉴定出[具体成员]在[具体物种]中对非生物胁迫有响应。本研究结果为进一步研究[具体物种]中的[该家族]基因奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67f9/5867877/706f17085254/genes-09-00156-g001.jpg

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