Nabi Rizwana Begum Syed, Tayade Rupesh, Imran Qari Muhammad, Hussain Adil, Shahid Muhammad, Yun Byung-Wook
Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu, South Korea.
Department of Southern Area Crop Science, National Institute of Crop Science, Rural Development Administration, Miryang, South Korea.
Front Plant Sci. 2020 Jul 14;11:1041. doi: 10.3389/fpls.2020.01041. eCollection 2020.
Advances in next-generation sequencing technologies facilitate the study of plant molecular functions in detail and with precision. Plant genome and proteome databases are continually being updated with large transcriptomic or genomic datasets. With the ever-increasing amount of sequencing data, several thousands of genes or proteins in public databases remain uncharacterized, and their domain functions are largely unknown. Such proteins contain domains of unknown function (DUF). In the present study, we identified 231 upregulated and 206 downregulated DUF genes from the available RNA-Seq-based transcriptome profiling datasets of leaves exposed to a nitric oxide donor, -nitroso-L-cysteine (CysNO). In addition, we performed extensive and biological experiments to determine the potential functions of and to elucidate its role in plant growth, development, and defense. We validated the expression pattern of the most upregulated and the most downregulated DUF genes from the transcriptomic data. In addition, a loss-of function mutant was evaluated for growth, development, and defense against biotic and abiotic stresses. According to the results of the study, negatively regulates biotic stress responses and differentially regulates plant growth under nitro-oxidative stress conditions.
新一代测序技术的进步有助于详细且精确地研究植物分子功能。植物基因组和蛋白质组数据库不断更新大量转录组或基因组数据集。随着测序数据量的不断增加,公共数据库中仍有数千个基因或蛋白质未被表征,其结构域功能大多未知。这类蛋白质包含功能未知结构域(DUF)。在本研究中,我们从暴露于一氧化氮供体亚硝基-L-半胱氨酸(CysNO)的叶片的现有基于RNA测序的转录组分析数据集中,鉴定出231个上调和206个下调的DUF基因。此外,我们进行了广泛的生物学实验,以确定其潜在功能,并阐明其在植物生长、发育和防御中的作用。我们验证了转录组数据中上调和下调幅度最大的DUF基因的表达模式。此外,对一个功能缺失突变体进行了生长、发育以及抵御生物和非生物胁迫方面的评估。根据研究结果,其对生物胁迫反应起负调控作用,并在硝基氧化应激条件下对植物生长进行差异调控。