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用于脑肿瘤分割的桥接U-Net-ASPP-EVO及深度学习优化

Bridged-U-Net-ASPP-EVO and Deep Learning Optimization for Brain Tumor Segmentation.

作者信息

Yousef Rammah, Khan Shakir, Gupta Gaurav, Albahlal Bader M, Alajlan Saad Abdullah, Ali Aleem

机构信息

Yogananda School of AI, Computers and Data Sciences, Shoolini University, Solan 173229, India.

College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia.

出版信息

Diagnostics (Basel). 2023 Aug 9;13(16):2633. doi: 10.3390/diagnostics13162633.

Abstract

Brain tumor segmentation from Magnetic Resonance Images (MRI) is considered a big challenge due to the complexity of brain tumor tissues, and segmenting these tissues from the healthy tissues is an even more tedious challenge when manual segmentation is undertaken by radiologists. In this paper, we have presented an experimental approach to emphasize the impact and effectiveness of deep learning elements like optimizers and loss functions towards a deep learning optimal solution for brain tumor segmentation. We evaluated our performance results on the most popular brain tumor datasets (MICCAI BraTS 2020 and RSNA-ASNR-MICCAI BraTS 2021). Furthermore, a new Bridged U-Net-ASPP-EVO was introduced that exploits Atrous Spatial Pyramid Pooling to enhance capturing multi-scale information to help in segmenting different tumor sizes, Evolving Normalization layers, squeeze and excitation residual blocks, and the max-average pooling for down sampling. Two variants of this architecture were constructed (Bridged U-Net_ASPP_EVO v1 and Bridged U-Net_ASPP_EVO v2). The best results were achieved using these two models when compared with other state-of-the-art models; we have achieved average segmentation dice scores of 0.84, 0.85, and 0.91 from variant1, and 0.83, 0.86, and 0.92 from v2 for the Enhanced Tumor (ET), Tumor Core (TC), and Whole Tumor (WT) tumor sub-regions, respectively, in the BraTS 2021validation dataset.

摘要

由于脑肿瘤组织的复杂性,从磁共振图像(MRI)中进行脑肿瘤分割被认为是一项巨大的挑战。当放射科医生进行手动分割时,从健康组织中分割出这些组织更是一项繁琐的挑战。在本文中,我们提出了一种实验方法,以强调优化器和损失函数等深度学习元素对脑肿瘤分割深度学习最优解的影响和有效性。我们在最流行的脑肿瘤数据集(MICCAI BraTS 2020和RSNA-ASNR-MICCAI BraTS 2021)上评估了我们的性能结果。此外,还引入了一种新的桥接U-Net-ASPP-EVO,它利用空洞空间金字塔池化来增强多尺度信息的捕捉,以帮助分割不同大小的肿瘤,进化归一化层、挤压和激励残差块,以及用于下采样的最大平均池化。构建了该架构的两个变体(桥接U-Net_ASPP_EVO v1和桥接U-Net_ASPP_EVO v2)。与其他现有模型相比,使用这两个模型取得了最佳结果;在BraTS 2021验证数据集中,对于增强肿瘤(ET)、肿瘤核心(TC)和全肿瘤(WT)肿瘤子区域,我们分别从变体1中获得了0.84、0.85和0.91的平均分割骰子分数,从v2中获得了0.83、0.86和0.92的平均分割骰子分数。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/50fe/10453237/0bf40598bb23/diagnostics-13-02633-g001.jpg

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